Like Bill, when I went to Read the Ecu the system crashed. THe car still worked but I had to go back in and clear codes. Clearing codes is now slightly different that what Bill did, per VF
Please run the software, go to Diagnostics > Toyota diagnostics tool >
and while connected to the OBDII press Reset on all modules / Reset DTC buttons (vehicle should be in Ignition On mode, engine NOT idling/running)
After clearing the codes, I tried again to read the ecu and had the same thing happen. I emailed them and went to bed, plan on attacking it again today once I hear from them if I am doing somethign wrong, or if the "read ECU" is even needed.